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2020年度发表论文

时间:2020-12-08    浏览次数:

1     Zhao X, Zhao XM.       Deep learning of brain magnetic resonance images: A brief review      Methods. 2020 Sep 12:S1046-2023(20)30202

2     Robert GH, Luo Q, Yu T, Chu C, Ing A, Jia T, Papadopoulos Orfanos D, Burke-Quinlan E, Desrivières S, Ruggeri B, Spechler P, Chaarani B, Tay N, Banaschewski T, Bokde ALW, Bromberg U, Flor H, Frouin V, Gowland P, Heinz A, Ittermann B, Martinot JL, Paillère Martinot ML, Nees F, Poustka L, Smolka MN, Vetter NC, Walter H, Whelan R, Conrod P, Barker T, Garavan H, Schumann G; IMAGEN Consortium.  Association of Gray Matter and Personality Development With Increased Drunkenness Frequency During Adolescence.  JAMA Psychiatry. 2020 Apr 1;77(4):409-419.

3     Shen C, Luo Q, Jia T, Zhao Q, Desrivières S, Quinlan EB, Banaschewski T, Millenet S, Bokde ALW, Büchel C, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Artiges E, Paillère-Martinot ML, Nees F, Papadopoulos Orfanos D, Paus T, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Li F, Feng J, Schumann G, Sahakian BJ; IMAGEN consortium.   Neural Correlates of the Dual-Pathway Model for ADHD in Adolescents.  Am J Psychiatry. 2020 Sep 1;177(9):844-854.

4     Ruan H, Luo Q, Palaniyappan L, Lu W, Huang CC, Zac Lo CY, Yang AC, Liu ME, Tsai SJ, Lin CP, Feng J.    Topographic diversity of structural connectivity in schizophrenia.  Schizophr Res. 2020 Jan; 215:181-189.

5     Wei L, Han X, Yu X, Sun Y, Ding M, Du Y, Jiang W, Zhou Y, Wang H.   Brain controllability and morphometry similarity of internet gaming addiction.      Methods. 2020 Aug 10:S1046-2023(20)30163-8.

6     Cheng W, Rolls E, Gong W, Du J, Zhang J, Zhang XY, Li F, Feng J.      Sleep duration, brain structure, and psychiatric and cognitive problems in children . Mol Psychiatry. 2020 Feb 3.

7     Cheng G, Ji H, He L.    Correcting and Reweighting False Label Masks in Brain Tumor Segmentation.        Med Phys. 2020 Sep 24.

8     Shen C, Luo Q, Chamberlain SR, Morgan S, Romero-Garcia R, Du J, Zhao X, Touchette É, Montplaisir J, Vitaro F, Boivin M, Tremblay RE, Zhao XM, Robaey P, Feng J, Sahakian BJ.    What Is the Link Between Attention-Deficit/Hyperactivity Disorder and Sleep Disturbance? A Multimodal Examination of Longitudinal Relationships and Brain Structure Using Large-Scale Population-Based Cohorts.      Biol Psychiatry. 2020 Sep 15;88(6):459-469.

9      Zeng T, Si B. Video data for the cognitive mapping process of NeuroBayesSLAM system. Data Brief. 2020 Apr 30;30:105637.

10   Zhang Z, Robinson L, Jia T, Quinlan EB, Tay N, Chu C, Barker ED, Banaschewski T, Barker GJ, Bokde ALW, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Stringaris A, Penttilä J, van Noort B, Grimmer Y, Paillère Martinot ML, Isensee C, Becker A, Nees F, Orfanos DP, Paus T, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G, Schmidt U, Desrivières S.        Development of Disordered Eating Behaviors and Comorbid Depressive Symptoms in Adolescence: Neural and Psychopathological Predictors.  Biol Psychiatry. 2020 Jun 10:S0006-3223(20)31672-3.

11   Lai S, Jia L, Subramanian B, Pan S, Zhang J, Dong Y, Chen WH, Zhao XM.      mMGE: a database for human metagenomic extrachromosomal mobile genetic elements.     Nucleic Acids Res. 2020 Oct 19:gkaa869.

12   Song L, Pan S, Zhang Z, Jia L, Chen WH, Zhao XM.      STAB: a spatio-temporal cell atlas of the human brain.     Nucleic Acids Res. 2020 Sep 25:gkaa762.

13   Xu W, Ying F, Luo Y, Zhang XY, Li Z.       Cross-sectional exploration of brain functional connectivity in the triadic development model of adolescents.       Brain Imaging Behav. 2020 Sep 11.

14   Mende DR, Letunic I, Maistrenko OM, Schmidt TSB, Milanese A, Paoli L, Hernández-Plaza A, Orakov AN, Forslund SK, Sunagawa S, Zeller G, Huerta-Cepas J, Coelho LP, Bork P.      proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.       Nucleic Acids Res. 2020 Jan 8;48(D1):D621-D625.

15   Gurumayum S, Jiang P, Hao X, Campos TL, Young ND, Korhonen PK, Gasser RB, Bork P, Zhao XM, He LJ, Chen WH.     OGEE v3: Online GEne Essentiality database with increased coverage of organisms and human cell lines.        Nucleic Acids Res. 2020 Oct 21:gkaa884.

16   Wang H, Rolls ET, Du X, Du J, Yang D, Li J, Li F, Cheng W, Feng J.    Severe nausea and vomiting in pregnancy: psychiatric and cognitive problems and brain structure in children.   BMC Med. 2020 Sep 1;18(1):228.

17   Wu S, Sun C, Li Y, Wang T, Jia L, Lai S, Yang Y, Luo P, Dai D, Yang YQ, Luo Q, Gao NL, Ning K, He LJ, Zhao XM, Chen WH.      GMrepo: a database of curated and consistently annotated human gut metagenomes.     Nucleic Acids Res. 2020 Jan 8;48(D1):D545-D553.

18   Yang H, Deng Z, Pan X, Shen HB, Choi KS, Wang L, Wang S, Wu J.    RNA-binding protein recognition based on multi-view deep feature and multi-label learning.    Brief Bioinform. 2020 Aug 17:bbaa174.

19   Jia T, Ing A, Quinlan EB, Tay N, Luo Q, Francesca B, Banaschewski T, Barker GJ, Bokde ALW, Bromberg U, Büchel C, Desrivières S, Feng J, Flor H, Grigis A, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Paus T, Poustka L, Fröhner JH, Smolka MN, Walter H, Whelan R, Schumann G.  IMAGEN Consortium.  Neurobehavioural characterisation and stratification of reinforcement-related behavior.     Nat Hum Behav. 2020 May;4(5):544-558.

20   Yu T, Jia T, Zhu L, Desrivières S, Macare C, Bi Y, Bokde ALW, Quinlan EB, Heinz A, Ittermann B, Liu C, Ji L, Banaschewski T, Ren D, Du L, Hou B, Flor H, Frouin V, Garavan H, Gowland P, Martinot JL, Paillère Martinot ML, Nees F, Orfanos DP, Luo Q, Chu C, Paus T, Poustka L, Hohmann S, Millenet S, Smolka MN, Vetter NC, Mennigen E, Lei C, Walter H, Fröhner JH, Whelan R, He G, He L, Schumann G, Robert G.  IMAGEN Consortium     Cannabis-Associated Psychotic-like Experiences Are Mediated by Developmental Changes in the Parahippocampal Gyrus.  J Am Acad Child Adolesc Psychiatry. 2020 May;59(5):642-649.

21   Cai DC, Wang Z, Bo T, Yan S, Liu Y, Liu Z, Zeljic K, Chen X, Zhan Y, Xu X, Du Y, Wang Y, Cang J, Wang GZ, Zhang J, Sun Q, Qiu Z, Ge S, Ye Z, Wang Z.    MECP2 Duplication Causes Aberrant GABA Pathways, Circuits and Behaviors in Transgenic Monkeys: Neural Mappings to Patients with Autism.    J Neurosci. 2020 May 6;40(19):3799-3814.

22   Liu Y, Li A, Zhao XM, Wang M.       DeepTL-Ubi: A novel deep transfer learning method for effectively predicting ubiquitination sites of multiple species.   Methods. 2020 Aug 10:S1046-2023(20)30156-0.

23   Zhu GY, Zhang RL, Chen YC, Liu YY, Liu DF, Wang SY, Jiang Y, Zhang JG.      Characteristics of globus pallidus internus local field potentials in generalized dystonia patients with TWNK mutation.  Clin Neurophysiol. 2020 Jul;131(7):1453-1461.

24   Yuan H, Zhu X, Tang W, Cai Y, Shi S, Luo Q.        Connectivity between the anterior insula and dorsolateral prefrontal cortex links early symptom improvement to treatment response.  J Affect Disord. 2020 Jan 1;260:490-497.

25   Jin K, Ou-Yang L, Zhao XM, Yan H, Zhang XF.       scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation.     Bioinformatics. 2020 May 1;36(10):3131-3138.

26   Zhang ZC, Zhang XF, Wu M, Ou-Yang L, Zhao XM, Li XL.  A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks.    Bioinformatics. 2020 Jun 1;36(11):3474-3481.

27      Cheng G, Ji H, Ding Z.   Spatial-channel relation learning for brain tumor segmentation. Med Phys. 2020 Jul 15. doi: 10.1002/mp.14392.

28   Tu JJ, Ou-Yang L, Yan H, Zhang XF, Qin H.     Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity.    Bioinformatics. 2020 May 1;36(9):2755-2762.

29   You R, Liu Y, Mamitsuka H, Zhu S.         BERTMeSH: Deep Contextual Representation Learning for Large-scale High-performance MeSH Indexing with Full Text.        Bioinformatics. 2020 Sep 25:btaa837.

30   Liu L, Huang X, Mamitsuka H, Zhu S.     HPOLabeler: improving prediction of human protein-phenotype associations by learning to rank.       Bioinformatics. 2020 Aug 15;36(14):4180-4188.

31   Dai S, You R, Lu Z, Huang X, Mamitsuka H, Zhu S.      FullMeSH: improving large-scale MeSH indexing with full text.       Bioinformatics. 2020 Mar 1;36(5):1533-1541.

32   Zeng T, Tang F, Ji D, Si B.        NeuroBayesSLAM: Neurobiologically inspired Bayesian integration of multisensory information for robot navigation.        Neural Netw. 2020 Jun;126:21-35.

33   Zhang L, Huang CC, Dai Y, Luo Q, Ji Y, Wang K, Deng S, Yu J, Xu M, Du X, Tang Y, Shen C, Feng J, Sahakian BJ, Lin CP, Li F.   Correction: Symptom improvement in children with autism spectrum disorder following bumetanide administration is associated with decreased GABA/glutamate ratios.    Transl Psychiatry. 2020 Feb 12;10(1):63.

34.     Thompson PM, Jahanshad N, Ching CRK, Salminen LE, Thomopoulos SI, Bright J, Baune BT, Bertolín S, Bralten J, Bruin WB, Bülow R, Chen J, Chye Y, Dannlowski U, de Kovel CGF, Donohoe G, Eyler LT, Faraone SV, Favre P, Filippi CA, Frodl T, Garijo D, Gil Y, Grabe HJ, Grasby KL, Hajek T, Han LKM, Hatton SN, Hilbert K, Ho TC, Holleran L, Homuth G, Hosten N, Houenou J, Ivanov I, Jia T, Kelly S, Klein M, Kwon JS, Laansma MA, Leerssen J, Lueken U, Nunes A, Neill JO, Opel N, Piras F, Piras F, Postema MC, Pozzi E, Shatokhina N, Soriano-Mas C, Spalletta G, Sun D, Teumer A, Tilot AK, Tozzi L, van der Merwe C, Van Someren EJW, van Wingen GA, Völzke H, Walton E, Wang L, Winkler AM, Wittfeld K, Wright MJ, Yun JY, Zhang G, Zhang-James Y, Adhikari BM, Agartz I, Aghajani M, Aleman A, Althoff RR, Altmann A, Andreassen OA, Baron DA, Bartnik-Olson BL, Marie Bas-Hoogendam J, Baskin-Sommers AR, Bearden CE, Berner LA, Boedhoe PSW, Brouwer RM, Buitelaar JK, Caeyenberghs K, Cecil CAM, Cohen RA, Cole JH, Conrod PJ, De Brito SA, de Zwarte SMC, Dennis EL, Desrivieres S, Dima D, Ehrlich S, Esopenko C, Fairchild G, Fisher SE, Fouche JP, Francks C, et al.  ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries.      Transl Psychiatry. 2020 Mar 20;10(1):100.

35.     Jiang P, Lai S, Wu S, Zhao XM, Chen WH.       Host DNA contents in fecal metagenomics as a biomarker for intestinal diseases and effective treatment.      BMC Genomics. 2020 May 11;21(1):348.

36.     Huang CC, Luo Q, Palaniyappan L, Yang AC, Hung CC, Chou KH, Zac Lo CY, Liu MN, Tsai SJ, Barch DM, Feng J, Lin CP, Robbins TW.     Transdiagnostic and Illness-Specific Functional Dysconnectivity Across Schizophrenia, Bipolar Disorder, and Major Depressive Disorder.   Biol Psychiatry Cogn Neurosci Neuroimaging. 2020 May;5(5):542-553.

37.     Heather Hsu CC, Rolls ET, Huang CC, Chong ST, Zac Lo CY, Feng J, Lin CP.   Connections of the Human Orbitofrontal Cortex and Inferior Frontal Gyrus.     Cereb Cortex. 2020 Oct 1;30(11):5830-5843.

38.     Tang Y, Liu X, Wang C, Cao M, Deng S, Du X, Dai Y, Geng S, Fan Y, Cui L, Li F.      Different strategies, distinguished cooperation efficiency, and brain synchronization for couples: An fNIRS-based hyperscanning study .  Brain Behav. 2020 Jul 25;10(9):e01768. .

39.     Rolls ET, Cheng W, Gilson M, Gong W, Deco G, Lo CZ, Yang AC, Tsai SJ, Liu ME, Lin CP, Feng J.       Beyond the disconnectivity hypothesis of schizophrenia.       Cereb Cortex. 2020 Mar 14;30(3):1213-1233.

40.     Luo Q, Pan B, Gu H, Simmonite M, Francis S, Liddle PF, Palaniyappan L.  Effective connectivity of the right anterior insula in schizophrenia: The salience network and task-negative to task-positive transition.        Neuroimage Clin. 2020 Aug 7;28:102377.

41.     Banca P, McNamee D, Piercy T, Luo Q, Robbins TW.    A Mobile Phone App for the Generation and Characterization of Motor Habits.     Front Psychol. 2020 Jan 8;10:2850.

42.     Luo Q, Zhang L, Huang CC, Zheng Y, Kanen JW, Zhao Q, Yao Y, Quinlan EB, Jia T, Banaschewski T, Bokde ALW, Bromberg U, Büchel C, Flor H, Frouin V, Garavan H, Gowland P, Heinz A, Ittermann B, Martinot JL, Martinot MP, Nees F, Orfanos DP, Poustka L, Hohmann S, Fröhner JH, Smolka MN, Walter H, Whelan R, Sahakian BJ, Schumann G, Li F, Feng J, Desrivières S, Robbins TW;  IMAGEN consortium. Association between childhood trauma and risk for obesity: a putative neurocognitive developmental pathway.    BMC Med. 2020 Oct 15;18(1):278.

43.     Wang L, Cheng W, Rolls ET, Dai F, Gong W, Du J, Zhang W, Wang S, Liu F, Wang J, Brown P, Feng J.   Association of specific biotypes in patients with Parkinson disease and disease progression.     Neurology. 2020 Sep 15;95(11):e1445-e1460.

44.     Wang J, Gong D, Luo H, Zhang W, Zhang L, Zhang H, Zhou J, Wang S.  Measurement of Step Angle for Quantifying the Gait Impairment of Parkinson's Disease by Wearable Sensors: Controlled Study.   JMIR Mhealth Uhealth. 2020 Mar 20;8(3):e16650.

45.     Zhu Q, Shen J, Han F, Lu W.   Bifurcation Analysis and Probabilistic Energy Landscapesof Two-Component Genetic Network.  IEEE ACCESS, 2020, 8: 150696-150708

46.     Robinson, Lauren;Zhang, Zuo;Jia, Tianye;Bobou, Marina;Roach, Anna;Campbell,Iain;Irish, Madeleine;Quinlan, Erin Burke;Tay, Nicole;Barker, Edward D;Banaschewski, Tobias;Bokde, Arun L W;Grigis, Antoine;Garavan, Hugh;Heinz, Andreas;Ittermann, Bernd;Martinot, Jean-Luc;Stringaris, Argyris;Penttila, Jani;van Noort, Betteke;Grimmer, Yvonne;Martinot, Marie-Laure Paillere;Insensee, Corinna;Becker, Andreas;Nees, Frauke;Orfanos, Dimitri Papadopoulos;Paus, Tomas;Poustka, Luise;Hohmann, Sarah;Frohner, Juliane H;Smolka, Michael N;Walter, Henrik;Whelan, Robert;Schumann, Gunter;Schmidt, Ulrike;Desrivieres, Sylvane.    Association of Genetic and Phenotypic Assessments With Onset of Disordered Eating Behaviors and Comorbid Mental Health Problems Among Adolescents.  JAMA network open, 2020, 3(12):e2026874

47.     Jingnan Du, Edmund T Rolls, Wei Cheng,Yu Li,Weikang Gong,Jiang Qiu,Jianfeng Feng. Functional connectivity of the orbitofrontal cortex, anterior cingulate cortex, and inferior frontal gyrus in humans.  CORTEX, 2020,123:185-199

48.     Feng, Ruiqing;Rolls Edmund T;Cheng, Wei;Feng, Jianfeng.   Hypertension is associated with reduced hippocampal connectivity and impaired memory.  EBioMedicine, 2020,61:103082

49.     Shibao, Priscila Yumi Tanaka;Santos-Junior, Celio Dias;Santiago, Adelita Carolina;Mohan, Chakravarthi;Miguel, Mariana Cardoso;Toyama, Danyelle;Vieira, Marcos Antonio Sanches;Narayanan, Subramonian;Figueira, Antonio;Carmona, Adriana K;Schiermeyer, Andreas;Soares-Costa, Andrea;Henrique-Silva, Flavio.   Sugarcane cystatins: From discovery to biotechnological applications.   International journal of biological macromolecules, 2020, 167:676-686

50.     Yijie Zhao,Samantha N Sallie,Hailun Cui, Ningning Zeng,Jiang Du,Tifei Yuan,Dianyou Li,Dirk De Ridder,Chencheng Zhang.   Anterior Cingulate Cortex in Addiction: New Insights for Neuromodulation.   Neuromodulation, 2020, DOI:10.1111/ner.13291

51.     Xie, Chao;Jia, Tianye;Rolls, Edmund T;Robbins Trevor W;Sahakian, Barbara J;Zhang, Jie;Liu, Zhaowen;Cheng, Wei;Luo, Qiang;Zac Lo, Chun-Yi;Wang, He;Banaschewski, Tobias;Barker, Gareth J;Bokde, Arun L W;Buchel, Christian;Quinlan, Erin Burke;Desrivieres, Sylvane;Flor, Herta;Grigis, Antoine;Garavan, Hugh;Gowland, Penny;Heinz, Andreas;Hohmann, Sarah;Ittermann, Bernd;Martinot, Jean-Luc;Paillere Martinot, Marie-Laure;Nees, Frauke;Orfanos, Dimitri Papadopoulos;Paus, Tomas;Poustka, Luise;Frohner, Juliane H;Smolka, Michael N;Walter, Henrik;Whelan, Robert;Schumann, Gunter;Feng, Jianfeng.    Reward Versus Nonreward Sensitivity of the Medial Versus Lateral Orbitofrontal Cortex Relates to the Severity of Depressive Symptoms.   Biological psychiatry. Cognitive neuroscience and neuroimaging, 2020, DOI:10.1016/j.bpsc.2020.08.017

52.    Duan, Wenjia. Yue, Qi. Liu, Ying. Zhang, Yunfei. Guo, Qinghua. Wang, Cong. Yin, Shujie. Fan, Dandan. Xu, Wenjing. Zhuang, Jianxian. Gong, Jiachcao. Li, Xinwei. Huang, Ruimin. Chen, Liang. Aime, Silvio. Wang, Zhongliang. Feng, Jianfeng. Mao, Ying. Zhang, Xiao-Yong. Li, Cong.   PH ratiometrically responsive surface enhanced resonance Raman scattering probe for tumor acidic margin delineation and image-guided surgery.    Chemical Science, 2020, 11(17):4397-4402.

53.    Santos-Junior, Celio Dias. Pan, Shaojun.Zhao, Xing-Ming.Coelho, Luis Pedro.    Macrel: antimicrobial peptide screening in genomes and metagenomes.   PEERJ, 2020, doi: 10.7717/peerj.10555.

54.    Zhao, Xingzhong. Chen, Jingqi. Xiao, Peipei. Feng, Jianfeng. Nie, Qing. Zhao, Xing-Ming.   Identifying age-specific gene signatures of the human cerebral cortex with joint analysis of transcriptomes and functional connectomes.   Brief Bioinform, 2020, DOI: 10.1093/bib/bbaa388

55.    Li, Shuo. Yuan, Bo. Cao, Jixin. Chen, Jingqi. Chen, Jinlong. Qiu, Jiayi. Zhao, Xing-Ming. Wang, Xiaolin. Qiu, Zilong. Cheng, Tian-Lin.   Docking sites inside Cas9 for adenine base editing diversification and RNA off-target elimination.    Nature Communications,  2020, DOI: 10.1038/s41467-020-19730-9